General articles on Genetics in the dog:

Verhoeven KJ, Jannink JL, McIntyre LM. Using mating designs to uncover QTL and the genetic architecture of complex traits. Heredity. 2006 Feb;96(2):139-49.
Lark KG, Chase K, Sutter NB. Genetic architecture of the dog: sexual size diorphism and functional morphology. Trends Genet. 2006 Oct; 22 (10): 537-44.
Parker HG, Ostrander EA. Canine genomics and genetics: running with the pack. PLoS Genet. 2005 Nov;1(5):e58. Review.
Modiano JF, Breen M, Burnett RC, Parker HG, Inusah S, Thomas R, Avery PR, Lindblad-Toh K, Ostrander EA, Cutter GC, Avery AC.Distinct B-cell and T-cell lymphoproliferative disease prevalence among dog breeds indicates heritable risk. Cancer Res. 2005 Jul 1;65(13):5654-61.
Lindblad-Toh K, (and many others). Genome sequence, comparative analysis and haplotype structure of the domestic dog.
Nature. 2005 Dec 8;438(7069):803-19.
Ostrander EA, Wayne RK. The canine genome.Genome Res. 2005 Dec;15(12):1706-16. Review.
Traas AM, Casal M, Haskins M, Henthorn P. Genetic counseling in the era of molecular diagnostics.Theriogenology. 2006 Aug;66(3):599-605. Epub 2006 Jun 13.
Leroy G,Rognon X,Varlet A,Joffrin C,Verrier E. Genetic variability in French dog breeds assessed by pedigree data. J Anim Breed Genet. 2006 Feb;123(1):1-9
Pomp D, Allan MF, Wesolowski SR. Quantitative genomics: exploring the genetic architecture of complex trait predisposition. J Anim Sci. 2004;82 E-Suppl:E300-312. Review